Peer Reviewed Papers 2011/12
Armstrong, J. D., Millidine, K. J. and Metcalfe, N. B. (2011) 'Ecological consequences of variation in standard metabolism and dominance among salmon parr', Ecology of Freshwater Fish , 20(3), 371-376.
Berx, B., Dickey-Collas, M., Skogen, M. D., de Roeck, Y. H., Klein, H., Barciela, R., Forster, R. M., Dombrowsky, E., Huret, M., Payne, M., Sagarminaga, Y. and Schrum, C. (2011) 'Does Operational Oceanography Address the Needs of Fisheries and Applied Environmental Scientists?', Oceanography , 24(1), 166-171.
Boulcott, P., and T. R. W. Howell. (2011) The impact of scallop dredging on rocky-reef substrata. Fisheries Research 110 (3):415-420.
Brand, L.E., L. Campbell and E. Bresnan. (2012) Karenia: The biology and ecology of a toxic genus. Harmful Algae 14 (special issue): 156-178.
Brown, J. M., T. J. Chesher, A. J. Beveridge, S. H. Shafiai, R. B. O. Murray, T. A. G. Smyth, L. M. Bricheno, and O. G. Way. (2012) Briefing: Young Coastal Scientists and Engineers Conference 2011. Proceedings of the Institution of Civil Engineers-Maritime Engineering 165 (1):7-20.
Butler, J. R. A., Middlemas, S. J., Graham, I. M. and Harris, R. N. (2011) 'Perceptions and costs of seal impacts on Atlantic salmon fisheries in the Moray Firth, Scotland: Implications for the adaptive co-management of seal-fishery conflict', Marine Policy , 35(3), 317-323.
Campbell, S., McBeath, A., Secombes, C., Snow, M. and Collet, B. (2011) 'Interferon response following infection with genetically similar isolates of viral haemorrhagic septicaemia virus (VHSV) exhibiting contrasting virulence in rainbow trout', Fish & Shellfish Immunology , 30(1), 287-294.
Capell, R., D. Tetzlaff, I. A. Malcolm, A. J. Hartley, and C. Soulsby. (2011) Using hydrochemical tracers to conceptualise hydrological function in a larger scale catchment draining contrasting geologic provinces. Journal of Hydrology 408 (1-2):164-177.
Chang, M. X., Collet, B., Nie, P., Lester, K., Campbell, S., Secombes, C. J. and Zou, J. (2011) 'Expression and Functional Characterization of the RIG-I-Like Receptors MDA5 and LGP2 in Rainbow Trout ( Oncorhynchus mykiss)', Journal of Virology , 85(16), 8403-8412.
Collet, B., and K. Lester. (2011) Establishment of an Atlantic salmon kidney cell line with an inducible gene expression system. Journal of Biotechnology, 154 (4):209-211.
Demain, D. K., Gallego, A., Jaworski, A., Priede, I. G. and Jones, E. G. (2011) 'Diet and feeding niches of juvenile Gadus morhua, Melanogrammus aeglefinus and Merlangius merlangus during the settlement transition in the northern North Sea', Journal of Fish Biology , 79(1), 89-111.
Dias, P. J., Malgrange, B., Snow, M. and Davies, I. M. (2011) 'Performance of Mussels, Mytilus edulis, Mytilus trossulus, and Their Hybrids in Cultivation at Three Scottish Lochs', Journal of the World Aquaculture Society , 42(1), 111-121.
Dias, P. J., Piertney, S. B., Snow, M. and Davies, I. M. (2011) 'Survey and management of mussel Mytilus species in Scotland', Hydrobiologia , 670(1), 127-140.
Dixon, P. F., Smail, D. A., Algoet, M., Hastings, T. S., Bayley, A., Byrne, H., Dodge, M., Garden, A., Joiner, C., Roberts, E., Verner-Jeffreys, D. and Thompson, F. (2012) Studies on the effect of temperature and pH on the inactivation of fish viral and bacterial pathogens. Journal of Fish Diseases 35(1): 51-64.
Ellis, J. S., Gilbey, J., Armstrong, A., Balstad, T., Cauwelier, E., Cherbonnel, C., Consuegra, S., Coughlan, J., Cross, T. F., Crozier, W., Dillane, E., Ensing, D., de Leaniz, C. G., Garcia-Vazquez, E., Griffiths, A. M., Hindar, K., Hjorleifsdottir, S., Knox, D., Machado-Schiaffino, G., McGinnity, P., Meldrup, D., Nielsen, E. E., Olafsson, K., Primmer, C. R., Prodohl, P., Stradmeyer, L., Vaha, J. P., Verspoor, E., Wennevik, V. and Stevens, J. R. (2011) 'Microsatellite standardization and evaluation of genotyping error in a large multi-partner research programme for conservation of Atlantic salmon ( Salmo salar L.)', Genetica , 139(3), 353-367.
Fernandes, P. G., K. Coull, C. Davis, P. Clark, R. Catarino, N. Bailey, R. Fryer, and A. Pout. (2011) Observations of discards in the Scottish mixed demersal trawl fishery. ICES Journal of Marine Science 68 (8):1734-1742.
Fourrier, M., Heuser, S., Munro, E. and Snow, M. (2011) 'Characterization and comparison of the full 3 ' and 5 ' untranslated genomic regions of diverse isolates of infectious salmon anaemia virus by using a rapid and universal method', Journal of Virological Methods , 174(1-2), 136-143.
Fridjonsson, O. F. O., Olafsson, K., Tompsett, S., Bjornsdottir, S., Consuegra, S., Knox, D., de Leaniz, C. G., Magnusdottir, S., Olafsdottir, G., Verspoor, E. and Hjorleifsdottir, S. (2011) 'Detection and mapping of mtDNA SNPs in Atlantic salmon using high throughput DNA sequencing', Bmc Genomics , 12.
Gallego, A., E. W. North, and E. D. Houde. (2012) Understanding and quantifying mortality in pelagic, early life stages of marine organisms - Old challenges and new perspectives Preface. Journal of Marine Systems 93:1-3.
Green, D.M., M. Werkman and L.A. Munro. (2012) The potential for targeted surveillance of live fish movements in Scotland. Journal of Fish Diseases 35(1): 29-37.
Green, D. M., Werkman, M., Munro, L. A., Kao, R. R., Kiss, I. Z. and Danon, L. (2011) 'Tools to study trends in community structure: Application to fish and livestock trading networks', Preventive Veterinary Medicine , 99(2-4), 225-228.
Greenstreet, S. P. R., H. M. Fraser, S. I. Rogers, V. M. Trenkel, S. D. Simpson, and J. K. Pinnegar. (2012) Redundancy in metrics describing the composition, structure, and functioning of the North Sea demersal fish community. ICES Journal of Marine Science 69 (1):8-22.
Gurney, W. S. C., P. J. Bacon, D. C. Speirs, P. McGinnity, and E. Verspoor. (2012) Sea-Age Variation in Maiden Atlantic Salmon Spawners: Phenotypic Plasticity or Genetic Polymorphism? Bulletin of Mathematical Biology 74 (3):615-640.
Heath, M.R., J. Rasmussen, M.C. Bailey, J. Dunn, J. Fraser, A. Gallego, S.J. Hay, M. Inglis and S. Robinson. (2012) Larval mortality rates and population dynamics of Lesser Sandeel ( Ammodytes marinus) in the northwestern North Sea. Journal of Marine Systems 93: 47-57.
Holmes, S. J., N. Bailey, N. Campbell, R. Catarino, K. Barratt, A. Gibb, and P. G. Fernandes. (2011) Using fishery-dependent data to inform the development and operation of a co-management initiative to reduce cod mortality and cut discards. ICES Journal of Marine Science, 68 (8):1679-1688.
Hoogenboom, M. O., J. D. Armstrong, M. S. Miles, T. Burton, T. G. G. Groothuis, and N. B. Metcalfe. (2011) Implantation of cocoa butter reduces egg and hatchling size in Salmo trutta. Journal of Fish Biology, 79 (3):587-596.
Hrachowitz, M., Soulsby, C., Tetzlaff, D. and Malcolm, I. A. (2011) 'Sensitivity of mean transit time estimates to model conditioning and data availability', Hydrological Processes , 25(6), 980-990.
Imholt, C., Malcolm, I. A., Bacon, P. J., Gibbins, C. N., Soulsby, C., Miles, M. and Fryer, R. J. (2011) 'Does diurnal temperature variability affect growth in juvenile Atlantic salmon Salmo salar?', Journal of Fish Biology , 78(2), 436-448.
Ivanovic, A., Neilson, R. D. and O'Neill, F. G. (2011) 'Modelling the physical impact of trawl components on the seabed and comparison with sea trials', Ocean Engineering , 38(7), 925-933.
Langton, R., Davies, I. M. and Scott, B. E. (2011) 'Seabird conservation and tidal stream and wave power generation: Information needs for predicting and managing potential impacts', Marine Policy , 35(5), 623-630.
Malcolm, I. A., A. F. Youngson, C. Soulsby, C. Imholt, and R. J. Fryer. (2011) Is Interstitial Velocity a Good Predictor of Salmonid Embryo Survival? Transactions of the American Fisheries Society, 140 (4):898-904.
Martinez, I., Jones, E. G., Davie, S. L., Neat, F. C., Wigham, B. D. and Priede, I. G. (2011) 'Variability in behaviour of four fish species attracted to baited underwater cameras in the North Sea', Hydrobiologia , 670(1), 23-34.
Mauritzen, C., Hansen, E., Andersson, M., Berx, B., Beszczynska-Moller, A., Burud, I., Christensen, K. H., Debernard, J., de Steur, L., Dodd, P., Gerland, S., Godoy, O., Hansen, B., Hudson, S., Hoydalsvik, F., Ingvaldsen, R., Isachsen, P. E., Kasajima, Y., Koszalka, I., Kovacs, K. M., Koltzow, M., LaCasce, J., Lee, C. M., Lavergne, T., Lydersen, C., Nicolaus, M., Nilsen, F., Nost, O. A., Orvik, K. A., Reigstad, M., Schyberg, H., Seuthe, L., Skagseth, O., Skarohamar, J., Skogseth, R., Sperrevik, A., Svensen, C., Soiland, H., Teigen, S. H., Tverberg, V. and Riser, C. W. (2011) 'Closing the loop - Approaches to monitoring the state of the Arctic Mediterranean during the International Polar Year 2007-2008', Progress in Oceanography , 90(1-4), 62-89.
Mayor, D. J., Cook, K., Thornton, B., Walsham, P., Witte, U. F. M., Zuur, A. F. and Anderson, T. R. (2011) 'Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod', Functional Ecology , 25(3), 509-518.
McGinnity, P., E. De Eyto, J. Gilbey, P. Gargan, W. Roche, T. Stafford, M. McGarrigle, N. O'Maoileidigh, and P. Mills. (2012) A predictive model for estimating river habitat area using GIS-derived catchment and river variables. Fisheries Management and Ecology 19 (1):69-77.
Neat, F., and N. Campbell. (2011) Demersal fish diversity of the isolated Rockall plateau compared with the adjacent west coast shelf of Scotland. Biological Journal of the Linnean Society, 104 (1):138-147.
Needle, C. L., and R. Catarino. (2011) Evaluating the effect of real-time closures on cod targeting. ICES Journal of Marine Science 68 (8):1647-1655.
Ondrackova, M., I. Matejusova, and J. Grabowska. (2012) Introduction of Gyrodactylus perccotti (Monogenea) into Europe on its invasive fish host, Amur sleeper ( Perccottus glenii, Dybowski 1877). Helminthologia 49 (1):21-26.
O'Neill, F. G. and Summerbell, K. (2011) 'The mobilisation of sediment by demersal otter trawls', Marine Pollution Bulletin , 62(5), 1088-1097.
Pan, M., Pierce, G. J., Cunningham, C. O. and Hay, S. J. (2011) 'Spatiotemporal coupling/decoupling of planktonic larvae and benthic settlement in decapods in the Scottish east coast', Marine Biology , 158(1), 31-46.
Penston, M. J., McBeath, A. J. A. and Millar, C. P. (2011) 'Densities of planktonic Lepeophtheirus salmonis before and after an Atlantic salmon farm relocation', Aquaculture Environment Interactions , 1(3), 225-232.
Reid, D. G., N. Graham, D. J. Rihan, E. Kelly, I. R. Gatt, F. Griffin, H. D. Gerritsen, and R. J. Kynoch. (2011) Do big boats tow big nets? ICES Journal of Marine Science, 68 (8):1663-1669.
Russell, M., C. D. Robinson, P. Walsham, L. Webster, and C. F. Moffat. (2011) Persistent organic pollutants and trace metals in sediments close to Scottish marine fish farms. Aquaculture, 319 (1-2):262-271.
Serpetti, N., Heath, M., Armstrong, E. and Witte, U. (2011) 'Blending single beam RoxAnn and multi-beam swathe QTC hydro-acoustic discrimination techniques for the Stonehaven area, Scotland, UK', Journal of Sea Research , 65(4), 442-455.
Serpetti, N., M. Heath, M. Rose, and U. Witte. (2012) High resolution mapping of sediment organic matter from acoustic reflectance data. Hydrobiologia 680 (1):265-284.
Shephard, S., D. G. Reid, and S. P. R. Greenstreet. (2011) Interpreting the large fish indicator for the Celtic Sea. ICES Journal of Marine Science, 68 (9):1963-1972.
Shutler, J. D., K. Davidson, P. I. Miller, S. C. Swan, M. G. Grant, and E. Bresnan. (2012) An adaptive approach to detect high-biomass algal blooms from EO chlorophyll-a data in support of harmful algal bloom monitoring. Remote Sensing Letters 3 (2):101-110.
Snow, M. (2011) 'The contribution of molecular epidemiology to the understanding and control of viral diseases of salmonid aquaculture', Veterinary Research , 42.
Soares, S., Green, D. M., Turnbull, J. F., Crumlish, M. and Murray, A. G. (2011) 'A baseline method for benchmarking mortality losses in Atlantic salmon (Salmo salar) production', Aquaculture , 314(1-4), 7-12.
Thrush, M. A., Murray, A. G., Brun, E., Wallace, S. and Peeler, E. J. (2011) 'The application of risk and disease modelling to emerging freshwater diseases in wild aquatic animals', Freshwater Biology , 56(4), 658-675.
Tobin, D. and Wright, P. J. (2011) 'Temperature effects on female maturation in a temperate marine fish', Journal of Experimental Marine Biology and Ecology , 403(1-2), 9-13.
Touzet, N., Lacaze, J. P., Maher, M., Turrell, E. and Raine, R. (2011) 'Summer dynamics of Alexandrium ostenfeldii (Dinophyceae) and spirolide toxins in Cork Harbour, Ireland', Marine Ecology-Progress Series , 425, 21-33.
Turnbull, J. F., Berrill, I. K., Green, D. M., Kaye, R., Morris, D., Murray, A. G., del-Pozo, J. and Shinn, A. (2011) 'Applied epidemiology with examples from UK aquaculture', Aquaculture Research , 42, 21-27.
Wang, T. H., Diaz-Rosales, P., Costa, M. M., Campbell, S., Snow, M., Collet, B., Martin, S. A. M. and Secombes, C. J. (2011) 'Functional Characterization of a Nonmammalian IL-21: Rainbow Trout Oncorhynchus mykiss IL-21 Upregulates the Expression of the Th Cell Signature Cytokines IFN-gamma, IL-10, and IL-22', Journal of Immunology, 186(2), 708-721.
Winfield, I. J., C. E. Adams, J. D. Armstrong, R. Gardiner, A. Kirika, J. Montgomery, B. M. Spears, D. C. Stewart, J. E. Thorpe, and W. Wilson. (2012) Changes in the fish community of Loch Leven: untangling anthropogenic pressures. Hydrobiologia 681 (1):73-84.
Wright, P. J., Gibb, F. M., Gibb, I. M. and Millar, C. P. (2011) 'Reproductive investment in the North Sea haddock: temporal and spatial variation', Marine Ecology-Progress Series , 432, 149-160.
Wright, P. J., C. P. Millar, and F. M. Gibb. (2011) Intrastock differences in maturation schedules of Atlantic cod, Gadus morhua. ICES Journal of Marine Science 68 (9):1918-1927.
Yates, K., P. Pollard, I. M. Davies, L. Webster, and C. F. Moffat. (2011) Application of silicone rubber passive samplers to investigate the bioaccumulation of PAHs by Nereis virens from marine sediments. Environmental Pollution, 159 (12):3351-3356.